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Crystal Structure of Human DOT1L in complex with inhibitor EPZ004777
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 1.6M (NH4)2SO4, 0.01M MgCl2, 0.1M NaCaCo, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 4.16 70.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 155.705 α = 90 b = 155.705 β = 90 c = 48.486 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2011-11-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.979310 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 47.859 99.7 0.106 12.7 11 26567 26567
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 100 0.715 0.715 3 10.6 3847
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.4 35 26637 26518 1310 99.55 0.2519 0.2519 0.2503 0.2417 0.2819 0.2714 RANDOM 54.199
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.59 -0.79 -1.59 2.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.913 r_dihedral_angle_3_deg 14.121 r_dihedral_angle_4_deg 10.49 r_dihedral_angle_1_deg 6.083 r_scangle_it 2.468 r_scbond_it 1.448 r_mcangle_it 1.281 r_angle_refined_deg 1.154 r_angle_other_deg 0.882 r_mcbond_it 0.686
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.913 r_dihedral_angle_3_deg 14.121 r_dihedral_angle_4_deg 10.49 r_dihedral_angle_1_deg 6.083 r_scangle_it 2.468 r_scbond_it 1.448 r_mcangle_it 1.281 r_angle_refined_deg 1.154 r_angle_other_deg 0.882 r_mcbond_it 0.686 r_mcbond_other 0.093 r_chiral_restr 0.07 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2424 Nucleic Acid Atoms Solvent Atoms 18 Heterogen Atoms 78
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction 31ID data collection