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Crystal structure of human DOT1L in complex with 2 molecules of EPZ004777
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 293 3.5 M NaFormate, 0.1 M NaAcet, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.7 66.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 150.605 α = 90 b = 150.605 β = 90 c = 53.179 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2011-10-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.979310 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.57 49.243 100 0.094 21.2 11 22277 22277
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.57 2.71 100 0.939 0.939 0.7 11.3 3231
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.57 49.24 22267 22247 1100 99.91 0.1964 0.1964 0.1953 0.2177 0.1986 PDB entry 3qow 52.7349
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.52 -0.26 -0.52 0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.011 r_dihedral_angle_4_deg 15.913 r_dihedral_angle_3_deg 13.989 r_dihedral_angle_1_deg 5.683 r_scangle_it 2.757 r_scbond_it 1.624 r_angle_refined_deg 1.307 r_mcangle_it 1.253 r_angle_other_deg 0.871 r_mcbond_it 0.659
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.011 r_dihedral_angle_4_deg 15.913 r_dihedral_angle_3_deg 13.989 r_dihedral_angle_1_deg 5.683 r_scangle_it 2.757 r_scbond_it 1.624 r_angle_refined_deg 1.307 r_mcangle_it 1.253 r_angle_other_deg 0.871 r_mcbond_it 0.659 r_mcbond_other 0.092 r_chiral_restr 0.074 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2535 Nucleic Acid Atoms Solvent Atoms 20 Heterogen Atoms 83
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction 31ID data collection XSCALE data scaling