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Crystal Structure of human DOT1L in complex with inhibitor SGC0947
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 293 3.5 M NaFormate, 0.1 M NaAcet, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.6 65.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 150.617 α = 90 b = 150.617 β = 90 c = 52.8 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2011-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.979310 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 43.233 99.7 0.116 13.2 11.4 34959 34959
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 100 0.835 0.835 0.9 11.4 5068
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.2 35 35042 34923 1722 99.66 0.2192 0.2192 0.218 0.2156 0.2418 0.2349 RANDOM 46.6586
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.64 -0.32 -0.64 0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.692 r_dihedral_angle_4_deg 18.02 r_dihedral_angle_3_deg 14.18 r_dihedral_angle_1_deg 5.455 r_scangle_it 3.447 r_scbond_it 2.097 r_mcangle_it 1.756 r_angle_refined_deg 1.38 r_angle_other_deg 0.971 r_mcbond_it 0.926
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.692 r_dihedral_angle_4_deg 18.02 r_dihedral_angle_3_deg 14.18 r_dihedral_angle_1_deg 5.455 r_scangle_it 3.447 r_scbond_it 2.097 r_mcangle_it 1.756 r_angle_refined_deg 1.38 r_angle_other_deg 0.971 r_mcbond_it 0.926 r_mcbond_other 0.15 r_chiral_restr 0.084 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2540 Nucleic Acid Atoms Solvent Atoms 57 Heterogen Atoms 43
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction 31ID data collection