☰ Navigation Tabs
Crystal structure of truncated (delta 1-89) human methionine aminopeptidase Type 1 in complex with N1-(5-chloro-6-methyl-2-(pyridin-2-yl)pyrimidin-4-yl)-N2-(6-(trifluoromethyl)pyridin-2-yl)ethane-1,2-diamine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 298 6% PEG 10000, 100mM HEPES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.33 47.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.219 α = 90 b = 77.332 β = 92.36 c = 47.153 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.00 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 92 0.035 0.051 24.4 4 34271 34271 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 65.1 0.2406 0.3 2.92 3.5 2406
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 47.19 2 34271 30814 3447 91.92 0.1876 0.1876 0.1844 0.1832 0.21552 0.2134 RANDOM 21.478
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.571 r_dihedral_angle_4_deg 17.5 r_dihedral_angle_3_deg 14.313 r_dihedral_angle_1_deg 6.278 r_scangle_it 3.475 r_scbond_it 2.202 r_mcangle_it 1.378 r_angle_refined_deg 1.337 r_mcbond_it 0.768 r_symmetry_hbond_refined 0.386
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.571 r_dihedral_angle_4_deg 17.5 r_dihedral_angle_3_deg 14.313 r_dihedral_angle_1_deg 6.278 r_scangle_it 3.475 r_scbond_it 2.202 r_mcangle_it 1.378 r_angle_refined_deg 1.337 r_mcbond_it 0.768 r_symmetry_hbond_refined 0.386 r_nbtor_refined 0.307 r_nbd_refined 0.208 r_symmetry_vdw_refined 0.174 r_metal_ion_refined 0.134 r_xyhbond_nbd_refined 0.116 r_chiral_restr 0.098 r_bond_refined_d 0.012 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2396 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement