4J8C

Crystal structure of the dimerization domain of Hsc70-interacting protein


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP72912.52 Na-malonate, pH 7.0, vapor diffusion, hanging drop, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
1.935.41

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 28.775α = 90
b = 43.978β = 93.44
c = 32.211γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2009-07-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID290.90004ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.143.9898.60.0570.05713.43.63231532315-1-17.173
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.11.1697.50.3230.32323.54640

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSIRASTHROUGHOUT1.1203113630476159897.880.13630.13630.13490.1618RANDOM14.8781
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.070.040.010.07
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.358
r_dihedral_angle_3_deg12.445
r_dihedral_angle_4_deg9.067
r_sphericity_free7.702
r_scangle_it6.247
r_sphericity_bonded5.972
r_dihedral_angle_1_deg4.865
r_scbond_it4.673
r_mcangle_it3.134
r_mcbond_it2.757
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.358
r_dihedral_angle_3_deg12.445
r_dihedral_angle_4_deg9.067
r_sphericity_free7.702
r_scangle_it6.247
r_sphericity_bonded5.972
r_dihedral_angle_1_deg4.865
r_scbond_it4.673
r_mcangle_it3.134
r_mcbond_it2.757
r_rigid_bond_restr1.995
r_angle_refined_deg1.722
r_angle_other_deg0.969
r_mcbond_other0.838
r_symmetry_vdw_other0.32
r_nbd_refined0.266
r_nbd_other0.219
r_symmetry_hbond_refined0.217
r_nbtor_refined0.189
r_xyhbond_nbd_refined0.189
r_symmetry_vdw_refined0.179
r_chiral_restr0.094
r_nbtor_other0.088
r_bond_refined_d0.015
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms720
Nucleic Acid Atoms
Solvent Atoms147
Heterogen Atoms6

Software

Software
Software NamePurpose
SCALAdata scaling
SHELXphasing
SHELXmodel building
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata scaling
XSCALEdata scaling
SHELXDphasing