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AKR1C2 complex with naproxen
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other in-house unliganded
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 20% PEG 3350, 0.2 M diammonium-L-tartrate, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.66 53.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 142.519 α = 90 b = 142.519 β = 90 c = 205.773 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-09-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 105.8 93.8 19.1 16.5 98708 98708 20.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 69 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT in-house unliganded 1.6 105.8 93636 93636 4942 93.5 0.1942 0.1942 0.19199 0.1932 0.23633 0.2331 RANDOM 21.361
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.63 0.32 0.63 -0.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.86 r_dihedral_angle_3_deg 13.791 r_dihedral_angle_4_deg 10.874 r_scangle_it 6.309 r_dihedral_angle_1_deg 6.1 r_scbond_it 4.533 r_mcangle_it 2.941 r_rigid_bond_restr 2.087 r_angle_refined_deg 1.995 r_mcbond_it 1.985
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.86 r_dihedral_angle_3_deg 13.791 r_dihedral_angle_4_deg 10.874 r_scangle_it 6.309 r_dihedral_angle_1_deg 6.1 r_scbond_it 4.533 r_mcangle_it 2.941 r_rigid_bond_restr 2.087 r_angle_refined_deg 1.995 r_mcbond_it 1.985 r_angle_other_deg 1.103 r_mcbond_other 0.677 r_chiral_restr 0.248 r_bond_refined_d 0.023 r_gen_planes_refined 0.01 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5042 Nucleic Acid Atoms Solvent Atoms 311 Heterogen Atoms 153
Software Software Software Name Purpose Blu-Ice data collection PHASER phasing REFMAC refinement XDS data reduction SCALA data scaling