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Salmonella typhi OmpF complex with Ciprofloxacin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3NSG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 0.1M Tri sodium citrate pH5.6, 0.25M potassium sodium tartrate, 2M Ammonium sulphate, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.94 68.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.16 α = 90 b = 139.11 β = 90 c = 151.15 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2011-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.979 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.32 102.358 99.8 0.116 0.116 10.9 7.1 27234 27234 83.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.32 3.5 99.6 0.557 0.557 0.601 0.222 1.3 7.1 3900
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3NSG 3.32 50 27137 1365 99.69 0.2752 0.2717 0.2763 0.3388 0.3444 RANDOM 96.5297
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.24 15.19 -9.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.784 r_dihedral_angle_3_deg 23.212 r_dihedral_angle_4_deg 18.819 r_dihedral_angle_1_deg 7.533 r_scangle_it 1.703 r_angle_refined_deg 1.487 r_mcangle_it 1.064 r_scbond_it 0.963 r_mcbond_it 0.573 r_chiral_restr 0.108
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.784 r_dihedral_angle_3_deg 23.212 r_dihedral_angle_4_deg 18.819 r_dihedral_angle_1_deg 7.533 r_scangle_it 1.703 r_angle_refined_deg 1.487 r_mcangle_it 1.064 r_scbond_it 0.963 r_mcbond_it 0.573 r_chiral_restr 0.108 r_bond_refined_d 0.012 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7666 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 24
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction