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Crystal structure of RSV epitope scaffold FFL_005
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 278 22% PEG 3350, 0.2M ammonium citrate tribasic, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 278K
Crystal Properties Matthews coefficient Solvent content 2.68 54.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.406 α = 90 b = 53.406 β = 90 c = 178.508 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315r M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 1.0 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.3 0.067 15.2 7 20776
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 94 0.392 6.6 1933
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 46.25 20687 1064 99.38 0.2089 0.2068 0.2405 0.247 0.2674 RANDOM 40.8097
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.01 0.02 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.152 r_dihedral_angle_4_deg 15.5 r_dihedral_angle_3_deg 14.606 r_scangle_it 6.693 r_dihedral_angle_1_deg 4.739 r_scbond_it 4.485 r_mcangle_it 2.723 r_mcbond_it 1.607 r_angle_refined_deg 1.555 r_angle_other_deg 0.904
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.152 r_dihedral_angle_4_deg 15.5 r_dihedral_angle_3_deg 14.606 r_scangle_it 6.693 r_dihedral_angle_1_deg 4.739 r_scbond_it 4.485 r_mcangle_it 2.723 r_mcbond_it 1.607 r_angle_refined_deg 1.555 r_angle_other_deg 0.904 r_mcbond_other 0.538 r_chiral_restr 0.068 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_gen_planes_other 0.001 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1800 Nucleic Acid Atoms Solvent Atoms 153 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction PHASER phasing