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Wild Type Human Transthyretin pH 7.5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 293 100mM HEPES, 200mM CaCl2, 28% PEG400 v/v, pH 7.5, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.99 38.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.21 α = 90 b = 41.32 β = 90 c = 63.01 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2012-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.920 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.27 42.1 99.7 58650 58474
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.27 1.3 0.626
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.27 35.01 55633 2962 99.66 0.16824 0.16609 0.1744 0.20897 0.2211 RANDOM 19.394
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 0.44 -0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.346 r_sphericity_free 25.723 r_dihedral_angle_4_deg 18.124 r_sphericity_bonded 17.139 r_dihedral_angle_3_deg 12.555 r_rigid_bond_restr 9.241 r_dihedral_angle_1_deg 7.253 r_scangle_other 5.036 r_long_range_B_refined 4.844 r_long_range_B_other 4.782
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.346 r_sphericity_free 25.723 r_dihedral_angle_4_deg 18.124 r_sphericity_bonded 17.139 r_dihedral_angle_3_deg 12.555 r_rigid_bond_restr 9.241 r_dihedral_angle_1_deg 7.253 r_scangle_other 5.036 r_long_range_B_refined 4.844 r_long_range_B_other 4.782 r_scbond_it 4.516 r_scbond_other 4.51 r_mcangle_other 4.094 r_mcangle_it 4.093 r_mcbond_it 3.738 r_mcbond_other 3.734 r_angle_refined_deg 2.798 r_angle_other_deg 1.19 r_chiral_restr 0.192 r_bond_refined_d 0.033 r_gen_planes_refined 0.015 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1631 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 2
Software Software Software Name Purpose GDA data collection PHASER phasing REFMAC refinement XDS data reduction SCALA data scaling