4N6F

Crystal structure of Amycolatopsis orientalis BexX complexed with G6P


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.529540% (v/v) PEG300, 0.1 M sodium cacodylate/HCl, pH 6.5, 0.2 M calcium acetate, vapor diffusion, hanging drop, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.7955.85

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 168.94α = 90
b = 168.94β = 90
c = 42.367γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102012-03-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCHESS BEAMLINE A10.9767CHESSA1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.25501000.06412.814.529855
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.252.291000.32514.81435

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.2546.929801151299.930.19260.19110.2221RANDOM39.0295
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.44-0.440.87
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.827
r_dihedral_angle_4_deg21.149
r_dihedral_angle_3_deg14.632
r_dihedral_angle_1_deg5.516
r_angle_other_deg3.648
r_mcangle_it2.828
r_mcbond_it1.713
r_mcbond_other1.711
r_angle_refined_deg1.192
r_chiral_restr0.063
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.827
r_dihedral_angle_4_deg21.149
r_dihedral_angle_3_deg14.632
r_dihedral_angle_1_deg5.516
r_angle_other_deg3.648
r_mcangle_it2.828
r_mcbond_it1.713
r_mcbond_other1.711
r_angle_refined_deg1.192
r_chiral_restr0.063
r_bond_refined_d0.007
r_gen_planes_refined0.005
r_gen_planes_other0.004
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3597
Nucleic Acid Atoms
Solvent Atoms107
Heterogen Atoms36

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
ADSCdata collection
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing