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The EMCV 3Dpol structure with altered motif A conformation at 2.15A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1U09 1U09(THE HOMOLOGY MODEL HAS BEEN USED.)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 10%PEG6000 and 2.0M NaCl, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.57 65.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.553 α = 90 b = 122.553 β = 90 c = 198.797 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2013-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 104.3 98.4 0.11 0.099 6.4 5 54658 40499 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.27 98.3 0.86 0.77 18.7 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1U09(THE HOMOLOGY MODEL HAS BEEN USED.) 2.15 104.3 54658 38457 2036 97.73 0.23061 0.23061 0.22948 0.232 0.2522 0.2556 RANDOM 40.315
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.96 0.96 -1.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.172 r_dihedral_angle_4_deg 14.787 r_dihedral_angle_3_deg 14.24 r_dihedral_angle_1_deg 4.727 r_long_range_B_refined 2.871 r_long_range_B_other 2.871 r_mcangle_it 0.976 r_mcangle_other 0.976 r_angle_refined_deg 0.877 r_scangle_other 0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.172 r_dihedral_angle_4_deg 14.787 r_dihedral_angle_3_deg 14.24 r_dihedral_angle_1_deg 4.727 r_long_range_B_refined 2.871 r_long_range_B_other 2.871 r_mcangle_it 0.976 r_mcangle_other 0.976 r_angle_refined_deg 0.877 r_scangle_other 0.75 r_angle_other_deg 0.7 r_mcbond_it 0.528 r_mcbond_other 0.528 r_scbond_other 0.414 r_scbond_it 0.413 r_chiral_restr 0.052 r_bond_refined_d 0.004 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3680 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 17
Software Software Software Name Purpose PHASER phasing REFMAC refinement XDS data reduction SCALA data scaling