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WDR5 in complex with influenza NS1 C-terminal tail
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other unpublished crystal structure of WDR5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 291 25% PEG3350, 0.1 M ammonium sulfate, 0.1 M bis-tris, pH 6.5, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.1 39.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.218 α = 90 b = 85.83 β = 90 c = 40.4 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2012-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97923 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 37.94 100 0.064 21.7 7.1 24106
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.87 1.91 99.9 1.054 2.3 7.2 1535
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT unpublished crystal structure of WDR5 1.87 37.94 24062 1239 99.9 0.1763 0.1743 0.1863 0.2121 0.2196 RANDOM 36.4632
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.94 -0.09 3.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.287 r_dihedral_angle_3_deg 12.989 r_dihedral_angle_4_deg 12.631 r_dihedral_angle_1_deg 7.019 r_mcangle_it 2.415 r_mcbond_it 1.734 r_mcbond_other 1.729 r_angle_refined_deg 1.393 r_angle_other_deg 0.785 r_chiral_restr 0.081
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.287 r_dihedral_angle_3_deg 12.989 r_dihedral_angle_4_deg 12.631 r_dihedral_angle_1_deg 7.019 r_mcangle_it 2.415 r_mcbond_it 1.734 r_mcbond_other 1.729 r_angle_refined_deg 1.393 r_angle_other_deg 0.785 r_chiral_restr 0.081 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2337 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms 17
Software Software Software Name Purpose Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction