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Crystal structure analysis of SCO4226 from Streptomyces coelicolor A3(2)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 289 1.6 M sodium citrate dehydrate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 1.66 25.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.574 α = 90 b = 66.982 β = 95.02 c = 34.265 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-11-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.9794 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 34.14 93.9 32680 30687 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.32 66.6 0.317
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.3 34.14 31002 29092 1550 93.84 0.15237 0.15327 0.15237 0.1513 0.16926 0.1699 RANDOM 9.945
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 -0.32 -0.58 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.54 r_dihedral_angle_4_deg 19.037 r_dihedral_angle_3_deg 11 r_dihedral_angle_1_deg 4.872 r_sphericity_free 2.806 r_scangle_it 2.206 r_sphericity_bonded 2.008 r_scbond_it 1.615 r_mcangle_it 1.117 r_angle_refined_deg 1.073
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.54 r_dihedral_angle_4_deg 19.037 r_dihedral_angle_3_deg 11 r_dihedral_angle_1_deg 4.872 r_sphericity_free 2.806 r_scangle_it 2.206 r_sphericity_bonded 2.008 r_scbond_it 1.615 r_mcangle_it 1.117 r_angle_refined_deg 1.073 r_rigid_bond_restr 0.982 r_mcbond_it 0.929 r_nbtor_refined 0.29 r_nbd_refined 0.2 r_symmetry_hbond_refined 0.19 r_symmetry_vdw_refined 0.155 r_xyhbond_nbd_refined 0.112 r_chiral_restr 0.078 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1256 Nucleic Acid Atoms Solvent Atoms 158 Heterogen Atoms
Software Software Software Name Purpose MAR345dtb data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling