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CRYSTAL STRUCTURE of NAF1 (MINER1): H114C THE REDOX-ACTIVE 2FE-2S PROTEIN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 35% PEG 3500, 100 mM Tris-HCl pH 8.0 and 100-200 mM NaCl, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.2 44.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.393 α = 90 b = 60.985 β = 90 c = 135.241 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2013-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.98 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 50 97.7 54202 54202
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.58 30.51 46700 50138 2689 95.11 0.16156 0.15972 0.19605 0.2067 RANDOM 20.147
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3 0.03 0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.761 r_sphericity_free 22.833 r_dihedral_angle_3_deg 13.019 r_sphericity_bonded 7.03 r_dihedral_angle_4_deg 6.093 r_dihedral_angle_1_deg 5.966 r_rigid_bond_restr 2.966 r_long_range_B_refined 2.694 r_long_range_B_other 2.491 r_mcangle_it 2.489
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.761 r_sphericity_free 22.833 r_dihedral_angle_3_deg 13.019 r_sphericity_bonded 7.03 r_dihedral_angle_4_deg 6.093 r_dihedral_angle_1_deg 5.966 r_rigid_bond_restr 2.966 r_long_range_B_refined 2.694 r_long_range_B_other 2.491 r_mcangle_it 2.489 r_scbond_it 2.24 r_mcangle_other 2.108 r_scangle_other 2.06 r_scbond_other 2.042 r_mcbond_it 1.993 r_mcbond_other 1.977 r_angle_refined_deg 1.89 r_angle_other_deg 0.768 r_chiral_restr 0.083 r_bond_refined_d 0.026 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3070 Nucleic Acid Atoms Solvent Atoms 264 Heterogen Atoms 24
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling