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Aerococcus viridans L-lactate oxidase mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 Drop contained 1 ul 10 mg/ml LOX in 50 mM potassium phosphate pH 7.0 and 1 ul well.
Well contained 50 mM pyruvate, 50 mM Tris (pH 8.0) and 30% PEG, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.06 40.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.593 α = 90 b = 124.355 β = 124.29 c = 106.885 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-07-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 0.98 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 99 98.2 26.4 3.7 157961 155981
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.68 95.1 0.371 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.65 10 155981 147348 7791 97.71 0.15336 0.15197 0.1656 0.17956 0.1895 RANDOM 14.313
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.502 r_dihedral_angle_3_deg 12.659 r_dihedral_angle_4_deg 12.232 r_dihedral_angle_1_deg 5.75 r_long_range_B_refined 3.672 r_long_range_B_other 3.672 r_scangle_other 2.499 r_scbond_it 1.594 r_scbond_other 1.594 r_angle_refined_deg 1.538
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.502 r_dihedral_angle_3_deg 12.659 r_dihedral_angle_4_deg 12.232 r_dihedral_angle_1_deg 5.75 r_long_range_B_refined 3.672 r_long_range_B_other 3.672 r_scangle_other 2.499 r_scbond_it 1.594 r_scbond_other 1.594 r_angle_refined_deg 1.538 r_mcangle_it 1.412 r_mcangle_other 1.412 r_mcbond_it 0.943 r_mcbond_other 0.943 r_angle_other_deg 0.857 r_chiral_restr 0.098 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11185 Nucleic Acid Atoms Solvent Atoms 920 Heterogen Atoms 160
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling