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The Pathway of Binding of the Intrinsically Disordered Mitochondrial Inhibitor Protein to F1-ATPase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2V7Q PDB entry 2v7q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 8.2 295 Tris-HCl, PEG 4000, magnesium chloride, EDTA, NaCl, spermidine
Crystal Properties Matthews coefficient Solvent content 3.14 60.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.015 α = 90 b = 154.42 β = 90 c = 269.465 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-09-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.99988 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 62.81 92.2 0.085 7.2 2.1 68526
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.27 93.9 0.287 0.771 2.5 2 4565
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2v7q 3.2 134.73 68448 3386 91.09 0.2364 0.2345 0.2724 0.2669 RANDOM 78.827
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 3.09 -3.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.987 r_dihedral_angle_3_deg 10.679 r_dihedral_angle_4_deg 9.533 r_dihedral_angle_1_deg 3.682 r_mcangle_it 1.35 r_mcbond_it 0.743 r_mcbond_other 0.743 r_angle_refined_deg 0.721 r_angle_other_deg 0.641 r_chiral_restr 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.987 r_dihedral_angle_3_deg 10.679 r_dihedral_angle_4_deg 9.533 r_dihedral_angle_1_deg 3.682 r_mcangle_it 1.35 r_mcbond_it 0.743 r_mcbond_other 0.743 r_angle_refined_deg 0.721 r_angle_other_deg 0.641 r_chiral_restr 0.04 r_bond_refined_d 0.004 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 23707 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 170
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing Coot model building PDB_EXTRACT data extraction