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Ternary complex of P38 and MK2 with a P38 inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 298 9% PEG 4K, 100mM NaCit, pH 5.6
Crystal Properties Matthews coefficient Solvent content 2.86 56.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.726 α = 90 b = 87.726 β = 90 c = 229.876 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.987 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 100 100 0.2 5.7 7.86 18845 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.11 100 0.66 2 7.94
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3 43.85 17806 963 99.93 0.2324 0.22828 0.2264 0.31254 0.3032 RANDOM 36.081
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.18 2.18 -4.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.863 r_dihedral_angle_3_deg 18.936 r_dihedral_angle_4_deg 17.204 r_dihedral_angle_1_deg 6.76 r_scangle_it 1.623 r_angle_refined_deg 1.292 r_scbond_it 0.903 r_mcangle_it 0.858 r_angle_other_deg 0.848 r_mcbond_it 0.456
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.863 r_dihedral_angle_3_deg 18.936 r_dihedral_angle_4_deg 17.204 r_dihedral_angle_1_deg 6.76 r_scangle_it 1.623 r_angle_refined_deg 1.292 r_scbond_it 0.903 r_mcangle_it 0.858 r_angle_other_deg 0.848 r_mcbond_it 0.456 r_chiral_restr 0.071 r_mcbond_other 0.049 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5406 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement