X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3MCGPDB ENTRY 3MCG

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
180.5M LICL, 1.65M (NH4)2SO4, pH 8
Crystal Properties
Matthews coefficientSolvent content
2.141

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 103.13α = 90
b = 90.35β = 118.86
c = 99.17γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPILATUS PILATUS2013-10-31MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-CAPS24-ID-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.765980.09134206813
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.77990.34.33.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3MCG2.763.8820681108998.810.245570.243280.28925RANDOM31.36
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.890.57-0.320.36
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.184
r_dihedral_angle_3_deg16.694
r_dihedral_angle_4_deg10.334
r_dihedral_angle_1_deg6.505
r_mcangle_it3.216
r_scbond_it2.122
r_mcbond_it1.964
r_mcbond_other1.964
r_angle_refined_deg1.451
r_angle_other_deg1.274
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.184
r_dihedral_angle_3_deg16.694
r_dihedral_angle_4_deg10.334
r_dihedral_angle_1_deg6.505
r_mcangle_it3.216
r_scbond_it2.122
r_mcbond_it1.964
r_mcbond_other1.964
r_angle_refined_deg1.451
r_angle_other_deg1.274
r_chiral_restr0.085
r_bond_refined_d0.01
r_bond_other_d0.007
r_gen_planes_refined0.007
r_gen_planes_other0.006
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6206
Nucleic Acid Atoms
Solvent Atoms57
Heterogen Atoms65

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing