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RADA C-TERMINAL ATPASE DOMAIN FROM PYROCOCCUS FURIOSUS BOUND TO ADP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4A6P PDB ENTRY 4A6P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.8 60 MM NAPHOSPHATE PH 5.8, 15% PEG1000
Crystal Properties Matthews coefficient Solvent content 2.15 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.308 α = 90 b = 87.13 β = 90.55 c = 62.322 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2008-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 43.56 99.1 0.1 10.44 3.51 34773 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.88 1.99 96.6 0.5 2.61 3.47
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4A6P 1.88 62.32 33051 1719 99.2 0.17416 0.17124 0.1816 0.2314 0.2434 RANDOM 22.423
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.85 -0.34 -2.06 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.121 r_dihedral_angle_4_deg 17.171 r_dihedral_angle_3_deg 13.909 r_dihedral_angle_1_deg 6.184 r_mcangle_it 2.993 r_scbond_it 2.651 r_mcbond_it 1.898 r_mcbond_other 1.895 r_angle_refined_deg 1.792 r_angle_other_deg 1.087
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.121 r_dihedral_angle_4_deg 17.171 r_dihedral_angle_3_deg 13.909 r_dihedral_angle_1_deg 6.184 r_mcangle_it 2.993 r_scbond_it 2.651 r_mcbond_it 1.898 r_mcbond_other 1.895 r_angle_refined_deg 1.792 r_angle_other_deg 1.087 r_chiral_restr 0.107 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.004 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3472 Nucleic Acid Atoms Solvent Atoms 496 Heterogen Atoms 59
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling AMoRE phasing