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[Ru(TAP)2(dppz-11-Me)]2+ bound to d(TCGGCGCCGA)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 291 1uL 2mM d(TCGGCGCCGA), 1uL 4mM rac-[Ru(TAP)2(dppz-11-Me)]2+, 6uL of a solution containing 20mM BaCl2, 80mM KCl, 12mM Spermine, 40mM Na-cacodylate pH 7, 10% v/v 2-methyl-2,4-pentanediol. Equilibriated against 1ml 35% 2-methyl-2,4-pentanediol.
Crystal Properties Matthews coefficient Solvent content 2.86 56.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.16 α = 90 b = 42.16 β = 90 c = 39.17 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2014-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.7749 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.05 28.7 99.1 21.8 6.2 16873
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.05 1.08 97.7 0.8 2.1 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.05 28.7 15996 848 98.8 0.09628 0.09582 0.0976 0.10497 0.105 RANDOM 17.434
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.44 -0.44 0.88
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 38.435 r_sphericity_bonded 14.662 r_rigid_bond_restr 7.693 r_long_range_B_refined 4.29 r_angle_other_deg 3.87 r_long_range_B_other 3.511 r_scangle_other 2.888 r_angle_refined_deg 2.815 r_scbond_it 2.336 r_scbond_other 2.333
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 38.435 r_sphericity_bonded 14.662 r_rigid_bond_restr 7.693 r_long_range_B_refined 4.29 r_angle_other_deg 3.87 r_long_range_B_other 3.511 r_scangle_other 2.888 r_angle_refined_deg 2.815 r_scbond_it 2.336 r_scbond_other 2.333 r_chiral_restr 0.093 r_gen_planes_refined 0.04 r_bond_refined_d 0.038 r_gen_planes_other 0.009 r_bond_other_d 0.002 r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 202 Solvent Atoms 77 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SHELX phasing