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PIM1 kinase in complex with Compound 1s
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XWS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.5 298 0.1M BisTRIS pH 5.5, 0.2M NaCl, 1.5M Ammonium Sulfate
Crystal Properties Matthews coefficient Solvent content 3.06 59.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.99 α = 90 b = 96.99 β = 90 c = 80.772 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2010-04-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.98 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 99.1 0.061 15 5 33796
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 99.5 0.384 5.1 3368
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1XWS 1.9 29.11 43013 1707 99.02 0.1576 0.1561 0.1688 0.1842 0.195 RANDOM 30.688
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.612 r_dihedral_angle_4_deg 21.015 r_dihedral_angle_3_deg 12.243 r_dihedral_angle_1_deg 6.611 r_mcangle_it 3.439 r_mcbond_it 2.667 r_mcbond_other 2.657 r_angle_refined_deg 2.114 r_angle_other_deg 0.968 r_chiral_restr 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.612 r_dihedral_angle_4_deg 21.015 r_dihedral_angle_3_deg 12.243 r_dihedral_angle_1_deg 6.611 r_mcangle_it 3.439 r_mcbond_it 2.667 r_mcbond_other 2.657 r_angle_refined_deg 2.114 r_angle_other_deg 0.968 r_chiral_restr 0.13 r_bond_refined_d 0.023 r_gen_planes_refined 0.016 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2205 Nucleic Acid Atoms Solvent Atoms 267 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data scaling HKL-2000 data reduction