X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP72930.1M Hepes-NaOH (pH7.0), 50%(v/v) MPD
Crystal Properties
Matthews coefficientSolvent content
2.1843.54

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.843α = 90
b = 84.353β = 98.92
c = 46.156γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152013-01-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL38B10.90SPring-8BL38B1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.225099.90.06910.36.4129491
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.221.2499.90.383.25.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.2250122948651999.740.126150.124580.15545RANDOM15.704
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.70.010.73-0.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.682
r_sphericity_free24.261
r_dihedral_angle_4_deg15.711
r_dihedral_angle_3_deg12.76
r_sphericity_bonded9.121
r_dihedral_angle_1_deg8.817
r_rigid_bond_restr6.105
r_long_range_B_refined3.855
r_scangle_other3.781
r_long_range_B_other3.749
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.682
r_sphericity_free24.261
r_dihedral_angle_4_deg15.711
r_dihedral_angle_3_deg12.76
r_sphericity_bonded9.121
r_dihedral_angle_1_deg8.817
r_rigid_bond_restr6.105
r_long_range_B_refined3.855
r_scangle_other3.781
r_long_range_B_other3.749
r_scbond_it3.236
r_scbond_other3.235
r_mcangle_it2.845
r_mcangle_other2.845
r_mcbond_it2.608
r_mcbond_other2.608
r_angle_refined_deg2.343
r_angle_other_deg1.083
r_chiral_restr0.14
r_bond_refined_d0.024
r_gen_planes_refined0.012
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3616
Nucleic Acid Atoms
Solvent Atoms411
Heterogen Atoms80

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing