X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP62930.1M Mes-NaOH (pH6.0), 45%(w/v) PEG1000
Crystal Properties
Matthews coefficientSolvent content
2.1442.61

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.927α = 90
b = 83.774β = 98.75
c = 45.947γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2013-11-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL44XU0.80SPring-8BL44XU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.25098.10.0817.93.1132391
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.21.2295.50.371.72.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.250125634664398.030.139510.13770.17376RANDOM16.943
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.39-0.030.57-0.17
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.763
r_sphericity_free25.104
r_dihedral_angle_4_deg20.277
r_dihedral_angle_3_deg12.798
r_sphericity_bonded11.312
r_dihedral_angle_1_deg8.139
r_rigid_bond_restr5.706
r_long_range_B_refined4.751
r_scangle_other4.746
r_long_range_B_other4.633
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.763
r_sphericity_free25.104
r_dihedral_angle_4_deg20.277
r_dihedral_angle_3_deg12.798
r_sphericity_bonded11.312
r_dihedral_angle_1_deg8.139
r_rigid_bond_restr5.706
r_long_range_B_refined4.751
r_scangle_other4.746
r_long_range_B_other4.633
r_scbond_it4.254
r_scbond_other4.253
r_mcangle_other3.933
r_mcangle_it3.931
r_mcbond_it3.534
r_mcbond_other3.511
r_angle_refined_deg2.289
r_angle_other_deg1.069
r_chiral_restr0.157
r_bond_refined_d0.022
r_gen_planes_refined0.011
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3640
Nucleic Acid Atoms
Solvent Atoms413
Heterogen Atoms106

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing