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Crystal Structures of mPGES-1 Inhibitor Complexes
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 294.15 100mM Tris HCl pH 8.5
32.5% PEG 1K
Crystal Properties Matthews coefficient Solvent content 4.15 70.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.434 α = 90 b = 76.434 β = 90 c = 123.264 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD RAYONIX MX225HE 2009-03-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.91986 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.41 41.1 98.9 11 5.6 50730
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.41 30 48148 2580 98.81 0.16729 0.16647 0.1722 0.18252 0.1858 RANDOM 22.372
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 -0.08 -0.16 0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.589 r_sphericity_free 31.295 r_dihedral_angle_3_deg 12.06 r_dihedral_angle_4_deg 12.044 r_sphericity_bonded 10.988 r_rigid_bond_restr 4.103 r_long_range_B_refined 3.93 r_dihedral_angle_1_deg 3.773 r_scbond_it 3.234 r_mcangle_it 2.282
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.589 r_sphericity_free 31.295 r_dihedral_angle_3_deg 12.06 r_dihedral_angle_4_deg 12.044 r_sphericity_bonded 10.988 r_rigid_bond_restr 4.103 r_long_range_B_refined 3.93 r_dihedral_angle_1_deg 3.773 r_scbond_it 3.234 r_mcangle_it 2.282 r_mcbond_it 2.007 r_angle_refined_deg 1.027 r_chiral_restr 0.061 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1157 Nucleic Acid Atoms Solvent Atoms 140 Heterogen Atoms 105
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction Coot model building SCALA data scaling SHELX phasing