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C. bescii Family 3 pectate lyase double mutant K108A/D107N in complex with trigalacturonic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 0.1 M Tris pH 8 and 61% MPD
Crystal Properties Matthews coefficient Solvent content 2.09 41.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 138.334 α = 90 b = 36.352 β = 132.67 c = 100.106 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.983970 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 34.58 95.1 15.5 6.8 91778
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.27 93.1 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.25 34.58 91778 4592 94.7 0.112 0.11 0.1096 0.156 0.1554 RANDOM 17.05
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 0.33 -0.83 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.77 r_dihedral_angle_4_deg 30.627 r_sphericity_free 20.819 r_sphericity_bonded 14.649 r_dihedral_angle_3_deg 12.05 r_dihedral_angle_1_deg 6.712 r_rigid_bond_restr 6.665 r_long_range_B_refined 5.051 r_scangle_other 4.798 r_scbond_it 4.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.77 r_dihedral_angle_4_deg 30.627 r_sphericity_free 20.819 r_sphericity_bonded 14.649 r_dihedral_angle_3_deg 12.05 r_dihedral_angle_1_deg 6.712 r_rigid_bond_restr 6.665 r_long_range_B_refined 5.051 r_scangle_other 4.798 r_scbond_it 4.58 r_scbond_other 4.58 r_long_range_B_other 4.531 r_mcangle_it 2.407 r_mcangle_other 2.407 r_mcbond_other 2.152 r_mcbond_it 2.151 r_angle_refined_deg 2.043 r_angle_other_deg 0.927 r_chiral_restr 0.125 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2973 Nucleic Acid Atoms Solvent Atoms 578 Heterogen Atoms 179
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing