4ZAA

Structure of A. niger Fdc1 in complex with 4-vinyl guaiacol


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2770.2 M potassium thiocyanate, Bis-Tris propane 6.5, 20 % w/v PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.4349.35

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 96.592α = 90
b = 64.467β = 90
c = 87.885γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2015-02-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.98DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.24294.1998.90.03111.56.5146799
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.2421.27494.40.34426

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.24294.19146799775299.830.144450.143460.16319RANDOM11.068
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.2-2.481.28
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.954
r_dihedral_angle_4_deg20.558
r_dihedral_angle_3_deg12.154
r_mcbond_other7.956
r_scangle_it6.487
r_dihedral_angle_1_deg6.464
r_rigid_bond_restr5.277
r_scbond_it4.859
r_angle_other_deg4.401
r_mcangle_it3.164
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.954
r_dihedral_angle_4_deg20.558
r_dihedral_angle_3_deg12.154
r_mcbond_other7.956
r_scangle_it6.487
r_dihedral_angle_1_deg6.464
r_rigid_bond_restr5.277
r_scbond_it4.859
r_angle_other_deg4.401
r_mcangle_it3.164
r_mcbond_it2.374
r_angle_refined_deg2.304
r_chiral_restr0.171
r_bond_refined_d0.026
r_gen_planes_other0.022
r_gen_planes_refined0.016
r_bond_other_d
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3815
Nucleic Acid Atoms
Solvent Atoms467
Heterogen Atoms100

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
PHASERphasing