5AK2

Oxyphenylpropenoic acids as Oral Selective Estrogen Receptor Down- Regulators.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1OF 0.1 M PCTP, PH 6.5 (0.04 M SODIUM PROPIONATE, 0.02 M SODIUM CACODYLATE, 0.04 M BIS-TRIS PROPANE), 22% PEG3350, 0.2M MGCL2
Crystal Properties
Matthews coefficientSolvent content
2.2244.62

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 106.07α = 90
b = 51.29β = 91.45
c = 83.31γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMONDDiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1946.1798.10.099.33.3228682
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.192.2497.80.5723.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.1946.1721696117297.780.214490.211910.26226RANDOM31.349
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.720.18-0.051.76
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.961
r_dihedral_angle_4_deg17.729
r_dihedral_angle_3_deg16.119
r_dihedral_angle_1_deg5.771
r_long_range_B_refined4.158
r_long_range_B_other3.978
r_scangle_other1.966
r_mcangle_it1.809
r_mcangle_other1.809
r_angle_refined_deg1.476
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.961
r_dihedral_angle_4_deg17.729
r_dihedral_angle_3_deg16.119
r_dihedral_angle_1_deg5.771
r_long_range_B_refined4.158
r_long_range_B_other3.978
r_scangle_other1.966
r_mcangle_it1.809
r_mcangle_other1.809
r_angle_refined_deg1.476
r_scbond_other1.246
r_scbond_it1.243
r_mcbond_it1.102
r_mcbond_other1.101
r_angle_other_deg1.024
r_chiral_restr0.09
r_bond_refined_d0.014
r_bond_other_d0.006
r_gen_planes_refined0.006
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3387
Nucleic Acid Atoms
Solvent Atoms142
Heterogen Atoms64

Software

Software
Software NamePurpose
REFMACrefinement