5BQQ

Human insulin with intra-chain chemical crosslink between modified B27 and B30


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1MSO 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52930.6 M Na2SO4, 0.3 M Tris pH 7.5, 0.6 mM Zn(Ac)2, 0.06% (w/v) phenol
Crystal Properties
Matthews coefficientSolvent content
2.2745.93

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 60.992α = 90
b = 60.992β = 90
c = 81.919γ = 120
Symmetry
Space GroupP 31

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2011-07-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-20.87260ESRFID23-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5444.391000.06818.85.750773
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.541.571000.4883.55.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1mso1.5452.8248163257799.950.162810.161140.19458RANDOM18.804
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.03-0.01-0.030.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.308
r_dihedral_angle_4_deg10.398
r_dihedral_angle_3_deg10.19
r_long_range_B_refined6.614
r_long_range_B_other6.613
r_dihedral_angle_1_deg6.269
r_scangle_other4.214
r_mcangle_it3.092
r_mcangle_other3.091
r_scbond_it2.746
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.308
r_dihedral_angle_4_deg10.398
r_dihedral_angle_3_deg10.19
r_long_range_B_refined6.614
r_long_range_B_other6.613
r_dihedral_angle_1_deg6.269
r_scangle_other4.214
r_mcangle_it3.092
r_mcangle_other3.091
r_scbond_it2.746
r_scbond_other2.745
r_mcbond_it2.108
r_mcbond_other2.107
r_angle_refined_deg2.03
r_angle_other_deg1.075
r_chiral_restr0.126
r_bond_refined_d0.021
r_gen_planes_refined0.011
r_bond_other_d0.003
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2363
Nucleic Acid Atoms
Solvent Atoms375
Heterogen Atoms74

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
MOLREPphasing
Aimlessdata scaling