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E. Coli Alkaline Phosphatase in complex with tungstate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3TG0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 291 sodium MOPS, sodium chloride, zinc chloride, magnesium chloride, PEG3350, ammonium fluoride, sodium tungstate
Crystal Properties Matthews coefficient Solvent content 2.78 55.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 161.26 α = 90 b = 161.26 β = 90 c = 139.432 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.977 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 52.74 93.6 0.03 14.1 5.6 64098 64098
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.03 2.08 93.4 3.9 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3TG0 2.03 52.74 60751 3281 92.71 0.19702 0.19469 0.2031 0.23987 0.2437 RANDOM 40.057
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.92 0.96 1.92 -6.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.566 r_dihedral_angle_3_deg 15.565 r_dihedral_angle_4_deg 11.724 r_dihedral_angle_1_deg 6.52 r_long_range_B_other 6.297 r_long_range_B_refined 6.292 r_scangle_other 5.13 r_scbond_it 3.834 r_mcangle_it 3.811 r_mcangle_other 3.811
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.566 r_dihedral_angle_3_deg 15.565 r_dihedral_angle_4_deg 11.724 r_dihedral_angle_1_deg 6.52 r_long_range_B_other 6.297 r_long_range_B_refined 6.292 r_scangle_other 5.13 r_scbond_it 3.834 r_mcangle_it 3.811 r_mcangle_other 3.811 r_scbond_other 3.757 r_mcbond_it 2.927 r_mcbond_other 2.926 r_angle_refined_deg 1.862 r_angle_other_deg 0.881 r_chiral_restr 0.11 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6482 Nucleic Acid Atoms Solvent Atoms 156 Heterogen Atoms 16
Software Software Software Name Purpose iMOSFLM data reduction Aimless data scaling PHASER phasing REFMAC refinement