☰ Navigation Tabs
Crystal Structure of amino acids 1590-1657 of MYH7
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1IK9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 16% (w/v) MEPEG 2000, 250 mM potassium nitrate, 100 mM 3-(N-morpholino)propanesulfonic acid (MOPS)
Crystal Properties Matthews coefficient Solvent content 3.78 67.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 223.628 α = 90 b = 83.967 β = 92.77 c = 39.424 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-12-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97924 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 99.4 0.09 34.1 4.8 43228
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 98.1 0.37 2.7 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1IK9 2.3 50 30554 1645 99.15 0.2099 0.2069 0.2112 0.2648 0.2619 RANDOM 67.878
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.45 3.04 0.64 -1.38
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 80.094 r_sphericity_bonded 37.843 r_dihedral_angle_2_deg 33.806 r_dihedral_angle_3_deg 15.036 r_dihedral_angle_4_deg 13.058 r_mcangle_it 12.354 r_mcbond_it 10.818 r_mcbond_other 10.806 r_dihedral_angle_1_deg 5.088 r_rigid_bond_restr 4.728
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 80.094 r_sphericity_bonded 37.843 r_dihedral_angle_2_deg 33.806 r_dihedral_angle_3_deg 15.036 r_dihedral_angle_4_deg 13.058 r_mcangle_it 12.354 r_mcbond_it 10.818 r_mcbond_other 10.806 r_dihedral_angle_1_deg 5.088 r_rigid_bond_restr 4.728 r_angle_refined_deg 1.414 r_angle_other_deg 1.208 r_chiral_restr 0.071 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3394 Nucleic Acid Atoms Solvent Atoms 54 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data reduction HKL-3000 data scaling PHASER phasing