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Crystal Structure of the first bromodomain of human BRD4 in complex with benzo[cd]indol-2(1H)-one ligand
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 277 20% PEG3350, 0.2M NaNO3, 0.1M HEPES,10% EtGhly, pH7.2
Crystal Properties Matthews coefficient Solvent content 1.95 36.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.06 α = 90 b = 45.82 β = 96.72 c = 47.74 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2015-03-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON OTHER 0.97776
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.62 47.41 98.5 0.047 0.02 0.998 31.5 6.3 16363
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.62 1.64 98 0.083 0.035 0.995 17.5 6.5 835
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.62 47.41 15568 787 98.3 0.1607 0.1593 0.1705 0.1868 0.1943 RANDOM 15.348
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.12 -0.03 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.314 r_dihedral_angle_4_deg 17.062 r_dihedral_angle_3_deg 12.827 r_dihedral_angle_1_deg 5.183 r_mcangle_it 1.787 r_angle_refined_deg 1.657 r_mcbond_it 1.097 r_mcbond_other 1.079 r_angle_other_deg 1.05 r_chiral_restr 0.363
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.314 r_dihedral_angle_4_deg 17.062 r_dihedral_angle_3_deg 12.827 r_dihedral_angle_1_deg 5.183 r_mcangle_it 1.787 r_angle_refined_deg 1.657 r_mcbond_it 1.097 r_mcbond_other 1.079 r_angle_other_deg 1.05 r_chiral_restr 0.363 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1082 Nucleic Acid Atoms Solvent Atoms 118 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction MOSFLM data reduction MOLREP phasing