5DYE

CRYSTAL STRUCTURE OF THE FULL LENGTH S156E MUTANT OF HUMAN AQUAPORIN 5


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.928121% PEG 400, 0.1M Tris pH 7.9, 0.1 M NaCl, 3% 1,6 hexanediol and 4% 1,3-propanediol as additive to the drop only
Crystal Properties
Matthews coefficientSolvent content
3.968.45

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 174.286α = 90
b = 174.286β = 90
c = 100.858γ = 120
Symmetry
Space GroupP 3 1 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42009-05-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-20.873ESRFID23-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.510198.90.095136.522191
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.53.6999.80.7991.96.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3.5150.7620774111598.640.280360.27880.31096RANDOM161.605
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.72.354.7-15.23
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.331
r_dihedral_angle_3_deg13.861
r_long_range_B_refined11.994
r_long_range_B_other11.994
r_dihedral_angle_4_deg10.372
r_mcangle_it8.315
r_mcangle_other8.314
r_scangle_other6.585
r_dihedral_angle_1_deg5.844
r_mcbond_it4.895
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.331
r_dihedral_angle_3_deg13.861
r_long_range_B_refined11.994
r_long_range_B_other11.994
r_dihedral_angle_4_deg10.372
r_mcangle_it8.315
r_mcangle_other8.314
r_scangle_other6.585
r_dihedral_angle_1_deg5.844
r_mcbond_it4.895
r_mcbond_other4.895
r_scbond_it3.581
r_scbond_other3.581
r_angle_refined_deg1.084
r_angle_other_deg0.892
r_chiral_restr0.052
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7296
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms29

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing