5EN1

Crystal structure of hnRNPA2B1 in complex with RNA


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP729325% PEG3350, 0.1M Tris pH8.5
Crystal Properties
Matthews coefficientSolvent content
2.2645.59

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 122.623α = 90
b = 46.38β = 96.02
c = 37.516γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU2015-10-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL18U10.987SSRFBL18U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.5828.8191.897.92.56187

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1U1Q2.5828.81588929991.760.193870.191620.23624RANDOM45.201
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.6-1.091.28-2.59
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.183
r_dihedral_angle_4_deg19.227
r_dihedral_angle_3_deg16.347
r_dihedral_angle_1_deg7.489
r_long_range_B_other7.1
r_long_range_B_refined7.099
r_scangle_other5.368
r_mcangle_other4.476
r_mcangle_it4.475
r_scbond_it3.202
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.183
r_dihedral_angle_4_deg19.227
r_dihedral_angle_3_deg16.347
r_dihedral_angle_1_deg7.489
r_long_range_B_other7.1
r_long_range_B_refined7.099
r_scangle_other5.368
r_mcangle_other4.476
r_mcangle_it4.475
r_scbond_it3.202
r_scbond_other3.185
r_mcbond_it2.771
r_mcbond_other2.754
r_angle_refined_deg1.615
r_angle_other_deg1.417
r_chiral_restr0.095
r_bond_refined_d0.011
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1491
Nucleic Acid Atoms150
Solvent Atoms11
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
HKL-3000data scaling
PHASERphasing