X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2910.1 M MES pH6.5, 0.21 M NaCl, 11.5% PEG4000
Crystal Properties
Matthews coefficientSolvent content
2.7455.13

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 109.07α = 90
b = 145.492β = 90
c = 174.241γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2015-05-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06DA1.0SLSX06DA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.35099.70.2240.985.966.9122939
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.4499.31.2230.4457

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.350116922601599.880.196230.193940.24091RANDOM32.046
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.5-1.15-0.35
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.679
r_dihedral_angle_4_deg19.575
r_dihedral_angle_3_deg15.393
r_long_range_B_refined6.929
r_long_range_B_other6.927
r_dihedral_angle_1_deg6.544
r_scangle_other5.057
r_mcangle_other4.178
r_mcangle_it4.177
r_scbond_it3.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.679
r_dihedral_angle_4_deg19.575
r_dihedral_angle_3_deg15.393
r_long_range_B_refined6.929
r_long_range_B_other6.927
r_dihedral_angle_1_deg6.544
r_scangle_other5.057
r_mcangle_other4.178
r_mcangle_it4.177
r_scbond_it3.09
r_scbond_other3.09
r_mcbond_it2.657
r_mcbond_other2.651
r_angle_refined_deg1.721
r_angle_other_deg1.002
r_chiral_restr0.094
r_bond_refined_d0.016
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms16876
Nucleic Acid Atoms
Solvent Atoms801
Heterogen Atoms36

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing