☰ Navigation Tabs
Isoform-specific inhibition of SUMO-dependent protein-protein interactions
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WM3 PDB ENTRIES 1WM3 and 5ELJ experimental model PDB 5ELJ PDB ENTRIES 1WM3 and 5ELJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.6 291 0.1 M HEPES sodium salt pH 7.6, 22% w/v polyethylene glycol 3350
Crystal Properties Matthews coefficient Solvent content 2.24 45.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.27 α = 90 b = 74.27 β = 90 c = 59.717 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-09-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.98 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.49 64.32 99.5 0.062 17.7 7.5 6930 2 2 49
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.49 2.61 96.7 0.454 3.8 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB ENTRIES 1WM3 and 5ELJ 2.49 64.32 6563 353 99.37 0.21965 0.21838 0.223 0.24265 0.2461 Random selection 67.427
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 0.08 0.16 -0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.579 r_dihedral_angle_4_deg 18.463 r_dihedral_angle_3_deg 14.09 r_long_range_B_refined 10.415 r_long_range_B_other 10.414 r_scangle_other 7.002 r_dihedral_angle_1_deg 6.3 r_mcangle_it 5.976 r_mcangle_other 5.973 r_scbond_it 4.377
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.579 r_dihedral_angle_4_deg 18.463 r_dihedral_angle_3_deg 14.09 r_long_range_B_refined 10.415 r_long_range_B_other 10.414 r_scangle_other 7.002 r_dihedral_angle_1_deg 6.3 r_mcangle_it 5.976 r_mcangle_other 5.973 r_scbond_it 4.377 r_scbond_other 4.367 r_mcbond_it 3.842 r_mcbond_other 3.84 r_angle_refined_deg 1.531 r_angle_other_deg 0.751 r_chiral_restr 0.077 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1232 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing