☰ Navigation Tabs
Crystal structure of C-terminal domain of shaft pilin spaA from Lactobacillus rhamnosus GG - P21212 space group with Yb Heavy atom
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 295 0.1M MES, 0.02M zinc sulphate, 25% PEG 550MME, 50mM Yb-DTPA-BMA
Crystal Properties Matthews coefficient Solvent content 2.34 47.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.603 α = 90 b = 75.252 β = 90 c = 117.388 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2014-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 1.28136 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.79 45.74 99.8 0.098 22.7 14 13205
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.79 2.94 98.8 0.452 7.1 13.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.79 45.74 12523 650 99.73 0.19916 0.19738 0.1999 0.23583 0.2349 RANDOM 62.155
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.19 1.99 -5.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.099 r_dihedral_angle_3_deg 13.838 r_dihedral_angle_4_deg 10.619 r_long_range_B_other 6.916 r_long_range_B_refined 6.914 r_dihedral_angle_1_deg 6.187 r_scangle_other 3.968 r_mcangle_it 2.971 r_mcangle_other 2.97 r_scbond_it 2.405
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.099 r_dihedral_angle_3_deg 13.838 r_dihedral_angle_4_deg 10.619 r_long_range_B_other 6.916 r_long_range_B_refined 6.914 r_dihedral_angle_1_deg 6.187 r_scangle_other 3.968 r_mcangle_it 2.971 r_mcangle_other 2.97 r_scbond_it 2.405 r_scbond_other 2.405 r_mcbond_it 1.805 r_mcbond_other 1.805 r_angle_refined_deg 1.087 r_angle_other_deg 0.754 r_chiral_restr 0.056 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3683 Nucleic Acid Atoms Solvent Atoms 26 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement XDS data processing Aimless data scaling PHENIX phasing Coot model building