X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5FUVPDB ENTRY 5FUV

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
170.15 M DL-MALIC ACID PH 7.0, 20% (W/V) PEG 3350, 1 MM TMP, 1 MM APPNHP, 3 MM MGCL2, PLUS SEEDING
Crystal Properties
Matthews coefficientSolvent content
2.5752

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 87.614α = 90
b = 96.999β = 90
c = 304.431γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PIXELMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.865.0295.90.18.55.6311682
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.9598.70.372.74.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 5FUV2.8152.2229477157095.660.210190.208470.24344RANDOM65.494
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
7.04-4.64-2.4
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.503
r_dihedral_angle_4_deg15.22
r_dihedral_angle_3_deg13.006
r_mcangle_it7.73
r_dihedral_angle_1_deg5.629
r_scbond_it5.497
r_mcbond_it5.113
r_mcbond_other5.113
r_angle_other_deg1.604
r_angle_refined_deg1.595
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.503
r_dihedral_angle_4_deg15.22
r_dihedral_angle_3_deg13.006
r_mcangle_it7.73
r_dihedral_angle_1_deg5.629
r_scbond_it5.497
r_mcbond_it5.113
r_mcbond_other5.113
r_angle_other_deg1.604
r_angle_refined_deg1.595
r_chiral_restr0.075
r_bond_refined_d0.012
r_bond_other_d0.01
r_gen_planes_refined0.008
r_gen_planes_other0.007
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7404
Nucleic Acid Atoms
Solvent Atoms41
Heterogen Atoms162

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
Aimlessdata scaling
PHASERphasing