☰ Navigation Tabs
DNA targeting ADP-ribosyltransferase Pierisin-1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 0.1M NaF, 6-10% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.1 41.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.383 α = 90 b = 93.383 β = 90 c = 120.614 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 315 2008-10-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1.000 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 95 16.7 4.71 47586
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 34.334 45142 2425 95.09 0.23292 0.23143 0.2604 0.2463 RANDOM 32.119
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 0.36 -0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.612 r_dihedral_angle_4_deg 12.731 r_dihedral_angle_3_deg 11.548 r_dihedral_angle_1_deg 6.158 r_long_range_B_refined 4.136 r_long_range_B_other 4.135 r_mcangle_it 1.819 r_mcangle_other 1.819 r_scangle_other 1.632 r_angle_refined_deg 1.155
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.612 r_dihedral_angle_4_deg 12.731 r_dihedral_angle_3_deg 11.548 r_dihedral_angle_1_deg 6.158 r_long_range_B_refined 4.136 r_long_range_B_other 4.135 r_mcangle_it 1.819 r_mcangle_other 1.819 r_scangle_other 1.632 r_angle_refined_deg 1.155 r_mcbond_it 1.016 r_mcbond_other 1.016 r_scbond_it 0.946 r_scbond_other 0.946 r_angle_other_deg 0.895 r_chiral_restr 0.064 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3602 Nucleic Acid Atoms Solvent Atoms 244 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing