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Sorangium cellulosum So Ce56 cytochrome P450 260B1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VZ7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 291 PEG 8000, ammonium sulfate, cacodylate
Crystal Properties Matthews coefficient Solvent content 2.13 41.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.42 α = 90 b = 60.42 β = 90 c = 190.82 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9393 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 35.3 99.4 0.06 8.68 5.58 35292 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.95 100 0.27 3.77 5.77
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2VZ7 1.85 35.3 33523 1767 99.29 0.17467 0.17221 0.21876 0.2316 RANDOM 30.084
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 -0.08 -0.16 0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.747 r_dihedral_angle_4_deg 19.286 r_dihedral_angle_3_deg 14.268 r_long_range_B_refined 6.621 r_long_range_B_other 6.62 r_dihedral_angle_1_deg 6.001 r_scangle_other 5.132 r_mcangle_other 3.716 r_mcangle_it 3.714 r_scbond_other 3.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.747 r_dihedral_angle_4_deg 19.286 r_dihedral_angle_3_deg 14.268 r_long_range_B_refined 6.621 r_long_range_B_other 6.62 r_dihedral_angle_1_deg 6.001 r_scangle_other 5.132 r_mcangle_other 3.716 r_mcangle_it 3.714 r_scbond_other 3.44 r_scbond_it 3.439 r_mcbond_it 2.804 r_mcbond_other 2.804 r_angle_refined_deg 2 r_angle_other_deg 0.963 r_chiral_restr 0.127 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_gen_planes_other 0.005 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2995 Nucleic Acid Atoms Solvent Atoms 244 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling MOLREP phasing