☰ Navigation Tabs
Crystal structure of human dihydroorotate dehydrogenase (DHODH) with compound 18T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.8 293 0.1M acetate, 40mM C11DAO, 20.8mM N,N-dimethyldecylamine-N-oxide (DDAO), 2mM DHO, 1.6-1.8 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 3.42 64.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.624 α = 90 b = 90.624 β = 90 c = 123.02 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 2015-04-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.987 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.62 39.24 99.9 3.5 20 70538
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.62 39.24 70538 3743 99.9 0.16131 0.16022 0.18175 0.195 RANDOM 21.41
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.85 r_dihedral_angle_4_deg 20.994 r_dihedral_angle_3_deg 13.334 r_long_range_B_other 6.524 r_long_range_B_refined 6.516 r_dihedral_angle_1_deg 5.926 r_scangle_other 5.684 r_scbond_it 3.85 r_scbond_other 3.849 r_mcangle_other 3.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.85 r_dihedral_angle_4_deg 20.994 r_dihedral_angle_3_deg 13.334 r_long_range_B_other 6.524 r_long_range_B_refined 6.516 r_dihedral_angle_1_deg 5.926 r_scangle_other 5.684 r_scbond_it 3.85 r_scbond_other 3.849 r_mcangle_other 3.004 r_mcangle_it 3.002 r_angle_refined_deg 2.704 r_mcbond_it 2.187 r_mcbond_other 2.115 r_angle_other_deg 1.054 r_chiral_restr 0.153 r_bond_refined_d 0.028 r_gen_planes_refined 0.015 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2790 Nucleic Acid Atoms Solvent Atoms 162 Heterogen Atoms 91
Software Software Software Name Purpose REFMAC refinement PHENIX data reduction HKL-3000 data scaling Coot phasing