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CYP106A2 WITH SUBSTRATE ABIETIC ACID
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1F4T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.2 291 PEG 4000
AMMONIUM ACETATE
SODIUM ACETATE TRIHYDRATE
Crystal Properties Matthews coefficient Solvent content 2.28 45.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.91 α = 72.37 b = 57.39 β = 75.19 c = 84.24 γ = 75.7
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9393 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 78.98 94.93 0.07 6.39 3.82 32407 46.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 95.3 0.22 2.94 4.11
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1F4T 2.4 78.73 29207 1556 94.93 0.2044 0.2012 0.211 0.26091 0.2741 RANDOM 63.362
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 9.05 -1.71 4.86 -4.53 -0.51 -2.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.578 r_dihedral_angle_4_deg 20.877 r_dihedral_angle_3_deg 17.509 r_long_range_B_refined 9.622 r_long_range_B_other 9.621 r_scangle_other 6.892 r_mcangle_other 6.511 r_mcangle_it 6.51 r_dihedral_angle_1_deg 6.444 r_scbond_it 4.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.578 r_dihedral_angle_4_deg 20.877 r_dihedral_angle_3_deg 17.509 r_long_range_B_refined 9.622 r_long_range_B_other 9.621 r_scangle_other 6.892 r_mcangle_other 6.511 r_mcangle_it 6.51 r_dihedral_angle_1_deg 6.444 r_scbond_it 4.315 r_scbond_other 4.315 r_mcbond_it 4.298 r_mcbond_other 4.29 r_angle_refined_deg 1.518 r_angle_other_deg 1.068 r_chiral_restr 0.088 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.006 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6248 Nucleic Acid Atoms Solvent Atoms 54 Heterogen Atoms 108
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling MOLREP phasing