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Crystal structure of Csd2-Csd2 dimer
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 296 HEPES, Jeffamine ED-2001
Crystal Properties Matthews coefficient Solvent content 2.35 47.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 140.772 α = 90 b = 140.772 β = 90 c = 40.244 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-11-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.97960 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50.01 99.8 47.1 16.4 22028
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 98.6 6.9 17
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.81 50.01 20898 1130 99.77 0.18249 0.18057 0.21822 0.2189 RANDOM 22.801
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 0.04 0.08 -0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.417 r_dihedral_angle_4_deg 17.463 r_dihedral_angle_3_deg 12.32 r_dihedral_angle_1_deg 6.577 r_long_range_B_refined 5.825 r_long_range_B_other 5.825 r_scangle_other 4.062 r_scbond_it 2.472 r_scbond_other 2.469 r_mcangle_it 2.363
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.417 r_dihedral_angle_4_deg 17.463 r_dihedral_angle_3_deg 12.32 r_dihedral_angle_1_deg 6.577 r_long_range_B_refined 5.825 r_long_range_B_other 5.825 r_scangle_other 4.062 r_scbond_it 2.472 r_scbond_other 2.469 r_mcangle_it 2.363 r_mcangle_other 2.363 r_mcbond_it 1.48 r_mcbond_other 1.474 r_angle_refined_deg 1.428 r_angle_other_deg 0.928 r_chiral_restr 0.102 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1457 Nucleic Acid Atoms Solvent Atoms 97 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling MOLREP phasing