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Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor (Chem 70786556)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 1.8-2.1 M ammonium sulfate, 0.2 M sodium chloride, 0.1 M sodium cacodylate, pH 6.2-6.8, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.91 68.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.592 α = 90 b = 105.806 β = 90 c = 207.25 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 2013-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 37.9 99.8 9 5.1 53600
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.7 37.69 50819 2720 99.7 0.21724 0.21593 0.2182 0.24205 0.2419 RANDOM 34.051
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.13 -1.46 -1.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.452 r_dihedral_angle_4_deg 14.636 r_dihedral_angle_3_deg 13.922 r_dihedral_angle_1_deg 5.632 r_long_range_B_refined 5.561 r_long_range_B_other 5.561 r_angle_other_deg 3.685 r_mcangle_it 3.217 r_mcangle_other 3.217 r_scangle_other 2.941
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.452 r_dihedral_angle_4_deg 14.636 r_dihedral_angle_3_deg 13.922 r_dihedral_angle_1_deg 5.632 r_long_range_B_refined 5.561 r_long_range_B_other 5.561 r_angle_other_deg 3.685 r_mcangle_it 3.217 r_mcangle_other 3.217 r_scangle_other 2.941 r_mcbond_it 1.848 r_mcbond_other 1.848 r_scbond_it 1.687 r_scbond_other 1.687 r_angle_refined_deg 1.398 r_chiral_restr 0.087 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_gen_planes_other 0.005 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8248 Nucleic Acid Atoms Solvent Atoms 249 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement Aimless data scaling HKL-2000 data reduction PHASER phasing