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Macrophage Migration Inhibitory Factor bound to Inhibitor K664 Derivative
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3U18
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293.15 2.4 M Ammonium Sulfate, 3% isopropanol and 0.1 M Tris pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.73 54.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.699 α = 90 b = 67.732 β = 90 c = 88.152 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2015-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 53.71 98.6 0.088 0.095 0.037 6.4 6.3 29961
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 1.98 93.4 0.857 0.983 0.478 0.618 4 1376
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3U18 2.05 53.71 23028 2566 97.43 0.1991 0.1954 0.2053 0.233 0.2394 RANDOM 27.31
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 -0.46 0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.513 r_dihedral_angle_4_deg 18.699 r_dihedral_angle_3_deg 11.852 r_dihedral_angle_1_deg 5.49 r_mcangle_it 2.18 r_mcbond_it 1.482 r_mcbond_other 1.481 r_angle_refined_deg 1.47 r_angle_other_deg 0.786 r_chiral_restr 0.084
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.513 r_dihedral_angle_4_deg 18.699 r_dihedral_angle_3_deg 11.852 r_dihedral_angle_1_deg 5.49 r_mcangle_it 2.18 r_mcbond_it 1.482 r_mcbond_other 1.481 r_angle_refined_deg 1.47 r_angle_other_deg 0.786 r_chiral_restr 0.084 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2599 Nucleic Acid Atoms Solvent Atoms 72 Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling PDB_EXTRACT data extraction HKL-2000 data reduction PHASER phasing