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EGFR-T790M in complex with pyrazolopyrimidine inhibitor 1a
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3VJO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 100 mM MES,
900 mM - 1100 mM Na/K-tartrate
Crystal Properties Matthews coefficient Solvent content 3.39 63.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.46 α = 90 b = 146.46 β = 90 c = 146.46 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2014-04-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.918840 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 46.31 100 0.137 1 28.39 40.65 18225 -3 58.003
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.57 100 1.647 2.76
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3vjo 2.5 46.31 17313 912 99.98 0.1982 0.1961 0.2391 0.2155 RANDOM 60.698
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.097 r_dihedral_angle_4_deg 13.268 r_dihedral_angle_3_deg 12.922 r_mcangle_it 8.496 r_mcbond_it 5.506 r_mcbond_other 5.499 r_dihedral_angle_1_deg 5.486 r_angle_other_deg 2.753 r_angle_refined_deg 1.775 r_chiral_restr 0.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.097 r_dihedral_angle_4_deg 13.268 r_dihedral_angle_3_deg 12.922 r_mcangle_it 8.496 r_mcbond_it 5.506 r_mcbond_other 5.499 r_dihedral_angle_1_deg 5.486 r_angle_other_deg 2.753 r_angle_refined_deg 1.775 r_chiral_restr 0.093 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_bond_other_d 0.009 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2333 Nucleic Acid Atoms Solvent Atoms 21 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction PHASER phasing