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Crystal structure of the de novo mini protein gEHEE_06
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 Peg, buffer 7
Crystal Properties Matthews coefficient Solvent content 2.18 43.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.92 α = 90 b = 45.533 β = 105.09 c = 49.704 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2014-04-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 50 96.7 0.111 14.4 3.6 8734
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.09 47.99 8310 412 96.59 0.20306 0.20067 0.2076 0.25084 0.2557 RANDOM 35.892
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 0.4 2.12 -1.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.923 r_dihedral_angle_4_deg 20.045 r_dihedral_angle_3_deg 15.015 r_dihedral_angle_1_deg 6.531 r_long_range_B_refined 5.74 r_long_range_B_other 5.738 r_scangle_other 3.345 r_mcangle_it 2.302 r_mcangle_other 2.301 r_angle_refined_deg 2.199
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.923 r_dihedral_angle_4_deg 20.045 r_dihedral_angle_3_deg 15.015 r_dihedral_angle_1_deg 6.531 r_long_range_B_refined 5.74 r_long_range_B_other 5.738 r_scangle_other 3.345 r_mcangle_it 2.302 r_mcangle_other 2.301 r_angle_refined_deg 2.199 r_scbond_it 2.122 r_scbond_other 2.122 r_angle_other_deg 2.078 r_mcbond_it 1.599 r_mcbond_other 1.595 r_chiral_restr 0.135 r_bond_refined_d 0.023 r_gen_planes_refined 0.014 r_bond_other_d 0.012 r_gen_planes_other 0.01 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1204 Nucleic Acid Atoms Solvent Atoms 68 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing