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Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 2 M AmSO4, 0.1 M CAPS pH 8 and 0.2 M LiSO4
Crystal Properties Matthews coefficient Solvent content 2.79 55.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 157.54 α = 90 b = 157.54 β = 90 c = 155.644 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-09-27 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.8726, 1.2543 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 48.9 92 0.075 14.5 3.5 71297
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 65.7 0.446 14.5 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD FREE R-VALUE 2.5 29.77 69794 1429 92.02 0.20711 0.20641 0.24117 0.2134 RANDOM 36.956
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.562 r_dihedral_angle_4_deg 14.41 r_dihedral_angle_3_deg 11.829 r_dihedral_angle_1_deg 5.723 r_long_range_B_refined 3.635 r_long_range_B_other 3.635 r_mcangle_it 1.868 r_mcangle_other 1.868 r_scangle_other 1.277 r_angle_refined_deg 1.112
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.562 r_dihedral_angle_4_deg 14.41 r_dihedral_angle_3_deg 11.829 r_dihedral_angle_1_deg 5.723 r_long_range_B_refined 3.635 r_long_range_B_other 3.635 r_mcangle_it 1.868 r_mcangle_other 1.868 r_scangle_other 1.277 r_angle_refined_deg 1.112 r_mcbond_it 1.009 r_mcbond_other 1.009 r_angle_other_deg 0.865 r_scbond_it 0.668 r_scbond_other 0.668 r_chiral_restr 0.065 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11487 Nucleic Acid Atoms Solvent Atoms 537 Heterogen Atoms 106
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling SHARP phasing