X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION8.9293Crystals of human C-His tagged 448-759 PDE10a were grown in 0.1 M Tris-HCl pH 8.9 with ~14% w/v PEG 3350 and 5 mM CaCl2
Crystal Properties
Matthews coefficientSolvent content
2.2344.73

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 49.46α = 90
b = 81.2β = 90
c = 160.15γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IV2008-07-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.74099.59.43.118304

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.7401736394099.010.240750.236460.32212RANDOM37.883
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.06-3.570.5
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.186
r_dihedral_angle_3_deg16.754
r_dihedral_angle_4_deg13.012
r_dihedral_angle_1_deg5.572
r_angle_refined_deg1.128
r_scangle_it1.043
r_angle_other_deg0.849
r_scbond_it0.681
r_mcangle_it0.668
r_mcbond_it0.387
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.186
r_dihedral_angle_3_deg16.754
r_dihedral_angle_4_deg13.012
r_dihedral_angle_1_deg5.572
r_angle_refined_deg1.128
r_scangle_it1.043
r_angle_other_deg0.849
r_scbond_it0.681
r_mcangle_it0.668
r_mcbond_it0.387
r_nbd_refined0.227
r_symmetry_vdw_refined0.214
r_symmetry_vdw_other0.196
r_nbtor_refined0.187
r_xyhbond_nbd_refined0.181
r_nbd_other0.175
r_metal_ion_refined0.135
r_symmetry_hbond_refined0.086
r_nbtor_other0.084
r_chiral_restr0.056
r_mcbond_other0.05
r_xyhbond_nbd_other0.041
r_bond_refined_d0.009
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5022
Nucleic Acid Atoms
Solvent Atoms59
Heterogen Atoms76

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling