☰ Navigation Tabs
Crystal Structure of the 1-acyl-sn-glycerophosphate (LPA) acyltransferase, PlsC, from Thermotoga maritima
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 18-22% (w/v) polyethylene glycol 3350 (PEG3350), 0.1 M HEPES, and 0.2 M MgCl 2
Crystal Properties Matthews coefficient Solvent content 3.81 67.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 173.836 α = 90 b = 173.836 β = 90 c = 173.836 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300-HS 2012-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 46.46 99.94 0.1879 0.996 10.18 9 21613
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.802 2.901 99.58 0.167 0.6 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.8 46.46 19924 1674 99.93 0.22359 0.21911 0.27703 0.2504 RANDOM 79.442
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.712 r_dihedral_angle_4_deg 23.655 r_dihedral_angle_3_deg 16.868 r_long_range_B_refined 9.762 r_long_range_B_other 9.761 r_scangle_other 7.963 r_dihedral_angle_1_deg 6.558 r_mcangle_it 6.301 r_mcangle_other 6.301 r_scbond_it 4.801
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.712 r_dihedral_angle_4_deg 23.655 r_dihedral_angle_3_deg 16.868 r_long_range_B_refined 9.762 r_long_range_B_other 9.761 r_scangle_other 7.963 r_dihedral_angle_1_deg 6.558 r_mcangle_it 6.301 r_mcangle_other 6.301 r_scbond_it 4.801 r_scbond_other 4.8 r_mcbond_it 3.977 r_mcbond_other 3.964 r_angle_refined_deg 2.009 r_angle_other_deg 1.064 r_chiral_restr 0.106 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3859 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 278
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SHELXCD phasing