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Human LSD1/CoREST: LSD1 Y761H mutation
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 298 Tartrate 1-1.4 M, ADA 100 mM pH 5.6
Crystal Properties Matthews coefficient Solvent content 4.3 82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.309 α = 90 b = 177.687 β = 90 c = 235.233 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 300K 2015-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 100 99.2 0.076 0.992 10.5 4.4 76680
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.65 100 0.97 1 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.6 100 75217 1460 98.78 0.20781 0.20759 0.2124 0.21877 0.2229 RANDOM 79.843
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.45 -3.07 -2.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.902 r_dihedral_angle_4_deg 14.963 r_dihedral_angle_3_deg 14.896 r_long_range_B_other 8.18 r_long_range_B_refined 8.17 r_scangle_other 5.729 r_mcangle_it 5.539 r_mcangle_other 5.539 r_dihedral_angle_1_deg 5.373 r_mcbond_it 3.445
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.902 r_dihedral_angle_4_deg 14.963 r_dihedral_angle_3_deg 14.896 r_long_range_B_other 8.18 r_long_range_B_refined 8.17 r_scangle_other 5.729 r_mcangle_it 5.539 r_mcangle_other 5.539 r_dihedral_angle_1_deg 5.373 r_mcbond_it 3.445 r_mcbond_other 3.442 r_scbond_it 3.404 r_scbond_other 3.404 r_angle_refined_deg 1.218 r_angle_other_deg 0.89 r_chiral_restr 0.064 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6291 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling REFMAC phasing